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Commit 998c48d6 authored by Mario Chirinos's avatar Mario Chirinos
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scripts

parent 16b833ab
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data/ent/09.csv 0 → 100644
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data/ent/31.csv 0 → 100644
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scripts/GI_L2ASCL_AreaProcessing.sh 0 → 100755
View file @ 998c48d6
#!/bin/sh
USERDIR=$1
BYTILE=${2:-0}
#if [ "$#" -nq 1 ]; then
# echo "Usage " $0 " <Processs Directory>"
# exit
#fi
echo "Starting Process..."
echo $USERDIR"findProducts.json"
wkt=$(getJSONparameter.py $USERDIR"findProducts.json" wkt)
RED='\033[0;31m'
NC='\033[0m' # No Color
echo "wkt"
echo $wkt
echo $USERDIR
cd $USERDIR
#0.- Create Shape File From WKT
echo "${RED}Creating Shape file...${NC}"
rm -r myshape
wktToShape.py $USERDIR"findProducts.json" "myshape"
#1.- Link L2A products
echo ${RED}"Linking Products..."${NC}
if [ ! -d "L2A" ]; then
mkdir L2A
fi
cd L2A
rm *
cd ..
yes yes | findProducts.py $USERDIR"findProducts.json"
#2.- Extract Images
echo ${RED}"Extracting JP2 Images..."${NC}
if [ ! -d "jp2" ]; then
mkdir jp2
fi
if [ $BYTILE -ne "0" ]; then
echo "BY TILE"
L2AProductListExtractData.sh $USERDIR"L2A/" $USERDIR"jp2/" 4 1
else
echo "BY DATE"
L2AProductListExtractData.sh $USERDIR"L2A/" $USERDIR"jp2/" 4 0
fi
#3.- Merge Images
echo ${RED}"\nMerging Images..."${NC}
if [ $BYTILE -ne "0" ]; then
echo "BY TILE"
cd $USERDIR"jp2/"
if [ ! -d "../out" ]; then
mkdir "../out"
fi
# ls -d */ | parallel -q --jobs 1 mergeImagesByDirectory.sh $USERDIR"jp2/"{} "$wtk" 4
for i in $(ls -d */) ; do
if [ ! -d "../out/"$i ]; then
mkdir "../out/"$i
fi
mergeImagesByDirectory.sh $USERDIR"jp2/"$i ../../../out/$i "$wkt"
done
else
echo "BY DATE"
cd $USERDIR"jp2/"
if [ ! -d "../out" ]; then
mkdir "../out"
fi
mergeImagesByDirectory.sh $USERDIR"jp2/" $USERDIR"out/" "$wkt" 4
fi
#4.- Mask raster with shape file
echo ${RED}"\nApplying Mask..."${NC}
if [ $BYTILE -ne "0" ]; then
echo "BY TILE"
cd $USERDIR"out/"
for d in $(ls -d */) ; do
cd $d
if [ ! -d "mask" ]; then
mkdir mask
fi
for i in $(ls *.tif) ; do
if [ ! -e mask/$i ]; then
gdalwarp -cutline $USERDIR"myshape/wkt.shp" -crop_to_cutline -dstalpha $i mask/$i
else
echo "Passing " $i
fi
done
cd ..
done
else
echo "BY DATE"
cd $USERDIR"out/"
if [ ! -d "mask" ]; then
mkdir mask
fi
for i in $(ls *.tif) ; do
if [ ! -e mask/$i ]; then
gdalwarp -cutline ../myshape/wkt.shp -crop_to_cutline -dstalpha $i mask/$i
else
echo "Passing " $i
fi
done
fi
#5.- Delete images with few data
echo ${RED}"\nDeleting Images..."${NC}
if [ $BYTILE -ne "0" ]; then
echo "BY TILE"
cd $USERDIR"out/"
for i in $(ls -d */) ; do
cd $i"mask"
echo $i
if [ ! -d "SCL" ]; then
mkdir SCL
fi
cp *SCL_60m.tif SCL
cd SCL
ls *.tif | parallel --jobs 4 imageMissingData.py {} $USERDIR"findproducts.json" 70
if [ ! -d "../TCI" ]; then
mkdir ../TCI
fi
for scl in $(ls *.tif)
do
fileprefix=$(echo $scl | (cut -d"_" -f1))
cp ../$fileprefix"_TCI_10m.tif" ../TCI/$fileprefix"_TCI_10m.tif"
done
cd $USERDIR"out/"
done
else
echo "BY DATE"
cd $USERDIR"out/mask/"
if [ ! -d "SCL" ]; then
mkdir SCL
fi
cp *SCL_60m.tif SCL
cd SCL
ls *.tif | parallel --jobs 4 imageMissingData.py {} $USERDIR"findproducts.json" 70
if [ ! -d "../TCI" ]; then
mkdir ../TCI
fi
for scl in $(ls *.tif)
do
fileprefix=$(echo $scl | (cut -d"_" -f1))
cp ../$fileprefix"_TCI_10m.tif" ../TCI/$fileprefix"_TCI_10m.tif"
cd ../TCI
done
fi
#6.-Creating Thumbnails
#echo ${RED}"Creating Thumbnails"${NC}
#if [ $BYTILE -ne "0" ]; then
# echo "BY TILE"
# cd $USERDIR"out/"
# for i in $(ls -d */) ; do
# cd $i"mask"
# if [ ! -d "SCL/thumbnails" ]; then
# mkdir SCL/thumbnails
# fi
# if [ ! -d "TCI/thumbnails" ]; then
# mkdir TCI/thumbnails
# fi
# cd TCI
# mogrify -format jpg -quality 100 *.tif
# mogrify -path ./thumbnails -resize 800x600! *.jpg
# cd thumbnails
# ffmpeg -pattern_type glob -i "*.jpg" -r 1 -vcodec libx264 $USERDIR"video.mp4"
# cd $USERDIR"out/"
# done
#else
# echo "BY DATE"
# cd $USERDIR"out/mask/"
# if [ ! -d "SCL/thumbnails" ]; then
# mkdir SCL/thumbnails
# fi
# if [ ! -d "TCI/thumbnails" ]; then
# mkdir TCI/thumbnails
# fi
# cd TCI
# mogrify -format jpg -quality 100 *.tif
# mogrify -path ./thumbnails -resize 10% *.jpg
#fi
#7.-Extract SCL information
echo ${RED}"Extracting SCL information..."${NC}
if [ $BYTILE -ne "0" ]; then
echo "BY TILE"
cd $USERDIR"out/"
for i in $(ls -d */) ; do
cd ../out/$i"mask/SCL"
if [ ! -d "json" ]; then
mkdir json
fi
SCLimageListToJSON.sh $USERDIR"out/"$i"mask/SCL/" $USERDIR"findProducts.json" 6
mv *.json json
cd json
tile=$(echo $i | cut -d "/" -f1)
mergeL2ASCL_JSON.py $USERDIR"out/"$i"mask/SCL/json/" > $USERDIR$tile"_sclData.json"
echo $tile
echo "_sclData.json"
cd $USERDIR"out/"
done
else
echo "BY DATE"
cd $USERDIR"out/mask/SCL/"
if [ ! -d "json" ]; then
mkdir json
fi
SCLimageListToJSON.sh $USERDIR"out/mask/SCL/" $USERDIR"findProducts.json" 6
mv *.json json
cd json
mergeL2ASCL_JSON.py $USERDIR"out/mask/SCL/json/" > $USERDIR"scl_data.json"
fi
#8.- Split SCL
echo ${RED}"Spliting SCL image..."${NC}
if [ $BYTILE -ne "0" ]; then
echo "BY TILE"
else
echo "BY DATE"
cd $USERDIR"out/mask/SCL/"
if [ ! -d "split" ]; then
mkdir split
fi
for f in $(ls *.tif) ; do
echo $f
splitSCL.py $f split/
done
fi
#9.-Create Tiles
#echo ${RED}"Creating Tiles..."${NC}
#if [ $BYTILE -ne "0" ]; then
# echo "BY TILE"
# cd $USERDIR"out/"
# for d in $(ls -d */) ; do
# cd $d"mask/TCI/"
# if [ ! -d "tiles" ]; then
# mkdir tiles
# fi
# for i in $(ls *.tif) ;
# do
# cd tiles
# gdal2tiles.py ../$i
# cd ..
# done
# cd $USERDIR"out/"
# cd $d"mask/SCL/"
# if [ ! -d "tiles" ]; then
# mkdir tiles
# fi
# for i in $(ls *.tif) ;
# do
# cd tiles
# gdal2tiles.py ../$i
# cd ..
# done
# cd $USERDIR"out/"
# done
#else
# echo "BY DATE"
# cd $USERDIR"out/mask/TCI/"
# if [ ! -d "tiles" ]; then
# mkdir tiles
# fi
# for i in $(ls *.tif) ;
# do
# cd tiles
# gdal2tiles.py --zoom="10-15" ../$i
# cd ..
# done
# cd $USERDIR"out/mask/SCL/split/"
# if [ ! -d "tiles" ]; then
# mkdir tiles
# fi
# for i in $(ls *.tif) ;
# do
# cd tiles
# gdal2tiles.py --zoom="10-15" ../$i
# cd ..
# done
#
#fi
exit
##9.-Create ZIP file
#echo "Compresing Files in " $USERDIR "..."
#cd $USERDIR
#zip -r myzip . --exclude *.json --exclude *.zip --exclude *thumbnails* --exclude *.tif -x ./jp2\* ./L2A\* \*\*/\*/SCL/\*^C
#echo "END"
#mv *SCL_60m.tif json
#cd json
scripts/createDirectories.py
View file @ 998c48d6
......@@ -3,27 +3,30 @@
import sys
#from myModule import myModule
import json
import csv
import os
import datetime
#===============================================================================
def createDirectories(jsonfile, cfgfile):
def createDirectories(datafile, cfgfile):
with open(cfgfile) as cfg_file:
cfg = json.load(cfg_file)
with open(jsonfile) as json_file:
data = json.load(json_file)
for p in data:
dirname = p["properties"]["Clv_Unica"]
with open(datafile) as csvfile:
data = csv.DictReader(csvfile, delimiter=',')
for row in data:
# print(cfg)
for k in cfg.keys():
p[k]=cfg[k]
mun = row["CVE_MUN"]
ent = row["CVE_ENT"]
dirname = ent+mun
print(ent)
# for k in cfg.keys():
# p[k]=cfg[k]
print(os.getcwd())
p["projectDir"]=os.getcwd()+"/"+dirname+"/"
p["endDate"]=datetime.datetime.now().strftime("%Y%m%d")
cfg["projectDir"]=os.getcwd()+"/"+dirname+"/"
cfg["endDate"]=datetime.datetime.now().strftime("%Y%m%d")
if not os.path.exists(dirname):
os.mkdir(dirname)
with open(dirname+'/findProducts.json', 'w') as outfile:
json.dump(p, outfile)
json.dump(cfg, outfile)
#===============================================================================
def main(argv):
......
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